今年，大学新鲜人泽木惣右卫门直保（坂口大助 配音）进入农业大学农学部，开始了全新的大学生活。其貌不扬的直保有一个天大的秘密，他能够看见存在于空气中的“菌”，甚至能够徒手抓住菌以及与其对话，这样的超能力对于农业专业的直保来说，无疑是如虎添翼，但是，麻烦也随之而来。
作为直保的亲梅竹马，直保的秘密无疑为家中经营酿酒行业的结城萤（斋贺观月 配音）创造了不少的便利。同时，外表意外老成的学长美里熏（小西克幸）和各方面都圆滚滚的川滨拓马（杉山纪彰 配音）都对直保产生了浓厚的兴趣。在崭新的校园里，直保和各式各样的菌在一起的生活就这样开始了。

Kō Kitamura, whose family owns a sporting goods store, has known the Tsukishima girls since he was born. The Tsukishima family runs a batting center and cafe, and they have four daughters. There's Ichiyo, the responsible eldest; Wakaba, Kō's cheerful best friend; Aoba, who doesn't get along with Kō; and Momiji, the energetic youngest daughter. When Kō enters high school, he aspires to lead his baseball team to the Koshien National High School Championship as their ace pitcher and make Wakaba's dream come true.

During the early 1930s in Chicago, the transcontinental train, Flying Pussyfoot, is starting its legendary journey that will leave a trail of blood all over the country. At the same time in New York, the ambitious scientist Szilard and his unwilling aide Ennis are looking for missing bottles of the immortality elixir. In addition, a war between the mafia groups is getting worse. On board the Advena Avis, in 1711, alchemists are about to learn the price of immortality. Takes place in the same universe as Durarara (2010).