Noah's Ark, the latest innovation in VR technology, is set for a showcase to Japan's privileged children. However, their carefree fun is cut short when a company employee is found murdered, with his dying message pointing to a clue hidden within the Ark. Along with the Detective Boys and Ran Mouri, Conan Edogawa enters Noah's Ark to solve this mystery and ensure the perpetrator is caught.

When a wealthy woman and her son die in a hunting accident, it's up to Conan Edogawa to solve the case. Meanwhile, Lupin the Third is after the Queen Crown, owned by the Vesparand royal family. When these two legendary characters meet, who will win the day?! Followed by “Lupin the Third vs. Detective Conan: The Movie” (2013).

Conan Edogawa sets out to apprehend Lupin the Third, the suspect of stealing a jewel called Cherry Sapphire.

The story follows Arion, a young man kidnapped by Hades as a child and raised to believe that his mother was blinded by Zeus and that killing the ruler of Mount Olympus will cure her.