2001年，表面繁荣的国际社会的内侧，实际存在着暗中掌控着全世界的邪恶秘密组织“毒牙”，他们邀请发现了特殊能源比姆拉的真田博士加入，而真田博士则选择了牺牲自己保护比姆拉的秘密。

在那之后，毒牙把魔爪伸向了真田博士的儿子健太，危机关头，神秘光头萨哈拉斯率领的古德闪电部队保护了健太，他们搭乘以比姆拉为能源的古德闪电一次又一次展开空间跳跃之旅，而为了夺取比姆拉，毒牙也对他们展开了追击。

2001年、国際社会に巧妙に根を下ろし、全世界を掌握せんとする悪の秘密結社ドクーガに、謎の男サバラスに率いられたグッドサンダー部隊が挑む。その面々が乗り込む移動要塞「グッドサンダー」は謎のエネルギー「ビムラー」が動力源であり、最大1万kmの距離を瞬間移動できる。だがドクーガも「ビムラー」を狙っていた。

When the sadness of her father's disappearance gets to Molly Hale, she unknowingly uses the Unown to create her own dream world along with Entei, who she believes to be her father. When Entei kidnaps Ash's mother, Ash — alongside Misty and Brock — invade the mansion looking for his mom and trying to stop the mysteries of Molly's Dream World and Entei!

Yoko Asagiri is in love, but is afraid to confess her feelings so she writes a song to express her feelings. Much to her dismay, the love song she wrote acted as a bridge connecting the world in which she lived in to that of Earth's alternate world called "Ashanti." There, the ruler of that world wants her song so that he could use it to open a doorway to Yoko's world and conquer it with his armies. Using the artifacts left behind by the legendary warrior Leda who prophesized her arrival, Yoko and her newfound friends must stop the tyrant's ambition and return both worlds to their proper place and balance.