El anime estará protagonizado por Haru Shinkai (voz de Yumi Uchiyama), el cual compra un Appli Drive (voz de Wataru Takagi) y lo utiliza para materializar un Gacchimon (voz de Kokoro Kikuchi), una aplicación de búsqueda de monstruos.

Upon arriving at the Digital World after the "reboot", the Digidestined are hunted by a new villain. Meanwhile, Sora is troubled by her partner Digimon's indifference towards her.

Meicoomon rampages after witnessing Meiko Mochizuki being injured by the man bearing Gennai's likeness. "It would have been better if you hadn't been born..." Meicoomon disappears into the Real World, which has since become distorted. Possessing overwhelming power, she's the key to the world's destruction.

The world has begun to collapse. The rampaging Meicoomon absorbs Tailmon, who underwent a dark evolution, and changes form into the immensely powerful Ordinemon. In accordance with Yggdrasil's expectation, the real world is about to be engulfed by the Digital World. Meanwhile, Homeostasis considers Ordinemon to be out of control and puts into motion its final plan that will entangle the real world. Then the time comes for the DigiDestined to arrive at a final decision. What future do they choose for themselves?

Tai is now a university student, living alone, working hard at school, and working every day, but with his future still undecided. Meanwhile, Matt and others continue to work on Digimon incidents and activities that help people with their partner Digimon. When an unprecedented phenomenon occurs, the DigiDestined discover that when they grow up, their relationship with their partner Digimon will come closer to an end.

在科技发达的未来，网络上流传着一种真假不明、被称为“全息幽灵”的奇怪现象。
初中一年级的天之河宙，启动了父亲留下的“数码暴龙机”开始能看到大家看不见的未知生物“数码宝贝”......

In 2012, after the events of Digimon Adventure: Last Evolution Kizuna, the early adulthood DigiDestined—Daisuke, Miyako, Iori, Takeru Takashi, Hikari, and Ken—must reconcile their new responsibilities with their Digimon partners. But Rui Owada, a mysterious young man, appears, claiming to be the first human to partner with a Digimon–Ukkomon. Could Rui really have been the first-ever DigiDestined?